HEC 3.0 User Guide

Overview of the HEC

  • Introduction
  • How the HEC Works
  • Applying for HEC access
  • Referencing and Acknowledging the HEC
  • Quick Reference (Cheat Sheet)

HEC Basics

  • Logging in to the HEC
  • Learning Linux/Unix
  • Using Filestore on the HEC
  • Using environment modules

Job submission and monitoring

  • Job Submission on the HEC
  • Monitoring jobs on the HEC
  • Running large memory jobs on the HEC
  • Job arrays - Submitting multiple similar jobs

Parallel job submission

  • Overview of Parallel jobs
  • Message Passing Interface (MPI) parallel jobs
  • OpenMP parallel jobs
  • Requesting specific node types
  • GPU Jobs

Job templates for popular software

  • Introduction
  • Using C and Fortran compilers on the HEC
  • ANSYS
  • The COMSOL Multiphysics Package
  • CP2K
  • CST
  • GROMACS
  • The GNU Scientific Library (GSL)
  • The LAMMPS molecular dynamics simulator
  • Matlab
  • The NAMD molecular dynamics simulator
  • Python, Conda and Mamba
  • The R Stats Package
  • Stata and StataMP
  • Turbomole
HEC 3.0 User Guide
  • Search

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